PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022719-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRF
Protein Properties Length: 374aa    MW: 42061.7 Da    PI: 8.4832
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022719-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.52.3e-23179222245
              WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       +pgrCrRtDGKkWRC++ v++++k+CE+H+hrg++rsrk +e+
  AHYPO_022719-RA 179 LQPGRCRRTDGKKWRCQQVVIPNEKYCEKHMHRGSKRSRKLVET 222
                      589**************************************997 PP
2QLQ354.4e-13110143336
              QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                      FT +Q ++L +Q+l++KyL+ + PvP +Ll + +
  AHYPO_022719-RA 110 FTEEQMEELNRQLLIFKYLVWGIPVPFQLLIQFW 143
                      9*****************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-5108144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166614.324109144IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-7110141IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.195178222IPR014977WRC domain
PfamPF088796.8E-19181221IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MNRLKPQFVT FFSSSSSTGQ CKDTDQKSKH GNDRWKEDKS EPLIKLGLGI GGSSFCNTRS  60
SEHTRKDNSF NRTLMVDNKE EEDDHHDVYD HDDDQLVEKE GCRKCSVVRF TEEQMEELNR  120
QLLIFKYLVW GIPVPFQLLI QFWTHFSYSS LPQHTQSSPI LQALNGRSFH YQHAMETDLQ  180
PGRCRRTDGK KWRCQQVVIP NEKYCEKHMH RGSKRSRKLV ETSPNAGTLN GINPNGNSNS  240
GSSKAQFLVN VDQNGSSMVM MRAPSLNNTT ANSDRNKNQH NETKSSIVTS PRSSVTNPAS  300
GFEFSPKSVL PNGLKPVRTA QNLNQGVKEP MARSGSARRV LFPAEDYGNS SSSEVTESDD  360
ENTGVWERIA LSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692311.16e-76PREDICTED: growth-regulating factor 9
TrEMBLA0A0K9S3W97e-73A0A0K9S3W9_SPIOL; Uncharacterized protein
STRINGXP_010692311.12e-75(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.16e-27growth-regulating factor 7