PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_022787-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Nin-like

Protein Properties

Length: 556aa MW: 63177.9 Da PI: 4.7419

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_022787-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	27.8	5e-09	387	415	16	44
RWP-RK 16 lpikdAAkeLgvclTvLKriCRqyGIkRW 44 +++ dAA +Lgv+ ++ Kr+CR +GI+ W AHYPO_022787-RA 387 MSMPDAAAKLGVSRSTFKRRCRDNGIQNW 415 6788************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.80.10.10	1.5E-30	79	266	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52047	2.51E-31	83	265	No hit	No description
Pfam	PF02042	5.1E-8	387	415	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.05E-18	469	553	No hit	No description
Gene3D	G3DSA:3.10.20.240	9.4E-19	471	551	No hit	No description
PROSITE profile	PS51745	14.887	471	546	IPR000270	PB1 domain
SMART	SM00666	3.7E-13	471	554	IPR000270	PB1 domain
Pfam	PF00564	1.1E-12	473	542	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MELLEYIDVE EFWNTIEDID EGKRVEETRP LWDYTDDEVN PSHPLFPQLQ DSLMDVVESC 60 NPPPKLLKLT SDIPTQDVNY YLHSKLQYLI LDLLPDIQSL SHSLGELQSL QYLQIRGSNL 120 KCLPDNITRL TNLQELELHW CPNLEYLPPN FGEFVSLTGL SIKGCKIREL PKTIVNLKNL 180 LVLDVDQCLR LEELPTNFDE LLHKLTVLDL RGCFKLKTLP PYLSQLVNLE KLHIRETNIK 240 LLPCSIKSLK NLEVLDLPDC YGFRDLIDKK DKLFDKIPAE KFVDDEAMIS HDSDPERNRN 300 RIVSVGDNSD VSDVPNLVIW SNDHLCDGDQ QGGITTSQDK DMMLAGVCTS IDENQHHDNA 360 QMNVSERMNT DKQSTSESIF SSLAQGMSMP DAAAKLGVSR STFKRRCRDN GIQNWGKSIK 420 KYKRNTMAVD TTMLNAVAKR STKEACSVVS QQDAGACDYS SGVNKAASTI QFLVKASYKD 480 DILRFNLEST SSMVELKEKV QERVQVLVDG KFKIKYQDDD QDWVIMACND DLQECFRLSA 540 LSRKDRVTLK ILDSL*

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MELLEYIDVE EFWNTIEDID EGKRVEETRP LWDYTDDEVN PSHPLFPQLQ DSLMDVVESC  60
NPPPKLLKLT SDIPTQDVNY YLHSKLQYLI LDLLPDIQSL SHSLGELQSL QYLQIRGSNL  120
KCLPDNITRL TNLQELELHW CPNLEYLPPN FGEFVSLTGL SIKGCKIREL PKTIVNLKNL  180
LVLDVDQCLR LEELPTNFDE LLHKLTVLDL RGCFKLKTLP PYLSQLVNLE KLHIRETNIK  240
LLPCSIKSLK NLEVLDLPDC YGFRDLIDKK DKLFDKIPAE KFVDDEAMIS HDSDPERNRN  300
RIVSVGDNSD VSDVPNLVIW SNDHLCDGDQ QGGITTSQDK DMMLAGVCTS IDENQHHDNA  360
QMNVSERMNT DKQSTSESIF SSLAQGMSMP DAAAKLGVSR STFKRRCRDN GIQNWGKSIK  420
KYKRNTMAVD TTMLNAVAKR STKEACSVVS QQDAGACDYS SGVNKAASTI QFLVKASYKD  480
DILRFNLEST SSMVELKEKV QERVQVLVDG KFKIKYQDDD QDWVIMACND DLQECFRLSA  540
LSRKDRVTLK ILDSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4fcg_A	4e-14	84	279	104	302	uncharacterized protein

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-17	NIN like protein 7

Link Out ? help Back to Top
Phytozome	AHYPO_022787-RA