PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_022836-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Nin-like

Protein Properties

Length: 892aa MW: 97846.3 Da PI: 5.953

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_022836-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.2	1.8e-29	505	556	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ AHYPO_022836-RA 505 AEKQISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 556 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.666	493	576	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-26	509	556	IPR003035	RWP-RK domain
SMART	SM00666	3.2E-25	796	878	IPR000270	PB1 domain
SuperFamily	SSF54277	4.25E-23	796	881	No hit	No description
PROSITE profile	PS51745	25.046	796	878	IPR000270	PB1 domain
Pfam	PF00564	9.5E-19	796	877	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.4E-27	796	877	No hit	No description
CDD	cd06407	7.16E-38	797	877	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MSEAATTATA EIEEENHQKS SSFFAHNCNN FPRIREFQSG VTQLHHTVLD PSSSTFMDLD 60 FGDLDASWSF DQIPTSPVLI TTSDQPFSPL WAFADERNPP GIRIPADLSR FPASQIWAPV 120 KSGDNYVLTT SGQPFVLGPH IDGESATNLG LPGRVFRQKL PEWTPDVQYY SSKEYPRVNH 180 AKHYNVRGTL ALPVLEPSGQ SCVGVLELIM TSQKINYAPE VDKVCKALEI CNEGRQNALA 240 EILEVLTEVC ETYKLPLAQT WVPCRHRSVL AYGGGFKKSC SSFDGSCMGQ VCMSTTDVAF 300 YVVDAHMWGF REACAEHHLQ KGQGVAGRSF SSHGLSFCRD ISQFCKIEYP LVHYARMFGL 360 TGSFSICLRS KHTGDDDYVL EFFLPLSLTD ISEQLSLLDS ILATMEHDLQ NLMIASGRTL 420 EEEKKHIEII EVSTDENPDL QVESNLLTRP LSVIEPLNGV LPSTKNSPPQ SVEPDVRNAG 480 KSVIEAAGIQ NKAPKKPSER KRGKAEKQIS LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC 540 RQHGISRWPS RKINKVNRSL TKLKRVIESV QGTDGTFSLT SLAQPTVPVP VGSITWPAGV 600 NGTCQQQSPT YVPVDLPDER SEMPQPKERV DGQASGRASS HERIHEQNGF VSKASGSREV 660 SAGTSTSHGS CHGSPGTEST PQNGHFVPNF HEQAGNSTGL ICQPNGELHL SVGYSMPDAL 720 LAAHHPREAF CGMLLEDAGS SKDLRNLCSS AAEANVDEVI PEPGWINQPC PNQSPRVAMS 780 AAGMMPRFSS KQDIKTVTIK ATFREDIIRF RFSLSSNIVE LKEEVAKRFK LEVGTFEIKY 840 LDDDHEWVLI ACDSDLQECL DVSKSSGSNM IRLLIHDILG NLGSSCESSG E*

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MSEAATTATA EIEEENHQKS SSFFAHNCNN FPRIREFQSG VTQLHHTVLD PSSSTFMDLD  60
FGDLDASWSF DQIPTSPVLI TTSDQPFSPL WAFADERNPP GIRIPADLSR FPASQIWAPV  120
KSGDNYVLTT SGQPFVLGPH IDGESATNLG LPGRVFRQKL PEWTPDVQYY SSKEYPRVNH  180
AKHYNVRGTL ALPVLEPSGQ SCVGVLELIM TSQKINYAPE VDKVCKALEI CNEGRQNALA  240
EILEVLTEVC ETYKLPLAQT WVPCRHRSVL AYGGGFKKSC SSFDGSCMGQ VCMSTTDVAF  300
YVVDAHMWGF REACAEHHLQ KGQGVAGRSF SSHGLSFCRD ISQFCKIEYP LVHYARMFGL  360
TGSFSICLRS KHTGDDDYVL EFFLPLSLTD ISEQLSLLDS ILATMEHDLQ NLMIASGRTL  420
EEEKKHIEII EVSTDENPDL QVESNLLTRP LSVIEPLNGV LPSTKNSPPQ SVEPDVRNAG  480
KSVIEAAGIQ NKAPKKPSER KRGKAEKQIS LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC  540
RQHGISRWPS RKINKVNRSL TKLKRVIESV QGTDGTFSLT SLAQPTVPVP VGSITWPAGV  600
NGTCQQQSPT YVPVDLPDER SEMPQPKERV DGQASGRASS HERIHEQNGF VSKASGSREV  660
SAGTSTSHGS CHGSPGTEST PQNGHFVPNF HEQAGNSTGL ICQPNGELHL SVGYSMPDAL  720
LAAHHPREAF CGMLLEDAGS SKDLRNLCSS AAEANVDEVI PEPGWINQPC PNQSPRVAMS  780
AAGMMPRFSS KQDIKTVTIK ATFREDIIRF RFSLSSNIVE LKEEVAKRFK LEVGTFEIKY  840
LDDDHEWVLI ACDSDLQECL DVSKSSGSNM IRLLIHDILG NLGSSCESSG E*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695590.1	0.0	PREDICTED: protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0J8BC07	0.0	A0A0J8BC07_BETVU; Uncharacterized protein
STRING	XP_010695590.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	AHYPO_022836-RA

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]