PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_022882-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NF-YB

Protein Properties

Length: 328aa MW: 35882.3 Da PI: 5.5429

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_022882-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	145.3	1.4e-45	147	240	2	95
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 reqd+++Pianv+rim+++lP +ak++++ake++q cvsefisf+tsea+++c+ e+rkti+++d++ a++ lGfe+yv+pl++yl+kyre e+ AHYPO_022882-RA 147 REQDQYMPIANVVRIMRRALPPQAKVADEAKELLQGCVSEFISFITSEANEHCHLEHRKTITAEDVIRAMSRLGFEHYVQPLSMYLQKYRESET 240 89*****************************************************************************************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.2E-44	145	239	IPR009072	Histone-fold
SuperFamily	SSF47113	1.51E-34	149	241	IPR009072	Histone-fold
Pfam	PF00808	1.0E-22	152	216	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.0E-15	180	198	No hit	No description
PRINTS	PR00615	3.0E-15	199	217	No hit	No description
PRINTS	PR00615	3.0E-15	218	236	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MATSPFLPSF IDHPNDLRSE EIVNYNQHKE LGAATLSASS LGNDDDPNMP IYNIQCPTMF 60 VGNANGLKTN IQAPVSITGN ANALKLPNNI QGSIPIACNT NGLNMPINNN QASMHYPFET 120 NSQSQDNNCK ILDIYTNSKT GLAAPFREQD QYMPIANVVR IMRRALPPQA KVADEAKELL 180 QGCVSEFISF ITSEANEHCH LEHRKTITAE DVIRAMSRLG FEHYVQPLSM YLQKYRESET 240 LPTAIPRSMA YLNNDVNAIT TTTSVMPPFA LVHPHYAMIT TLPSVSVGNG PNLALRIGDG 300 SGGSDGAGSS ESPQNGFDFF YTYDKYK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-42	147	237	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019103535.1	4e-82	PREDICTED: nuclear transcription factor Y subunit B-9
TrEMBL	A0A0K9R0E7	3e-72	A0A0K9R0E7_SPIOL; Uncharacterized protein
STRING	XP_010669682.1	2e-81	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	2e-42	NF-YB family protein

Link Out ? help Back to Top
Phytozome	AHYPO_022882-RA