PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01009431.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 53aa    MW: 5706.32 Da    PI: 6.7579
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01009431.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB53.46.4e-172153234
                  NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaket 34
                           reqdrflPianvsrimk++lPanakiskdaket
  AMDW01009431.1_FGP001 21 REQDRFLPIANVSRIMKRALPANAKISKDAKET 53
                           8******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.22E-101152IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.7E-151853IPR009072Histone-fold
PfamPF008083.3E-82653IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
MPDSDNESGG PSNAGEYASA REQDRFLPIA NVSRIMKRAL PANAKISKDA KET
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01009431.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880371e-78AB288037.1 Oryza sativa Japonica Group OsHAP3F gene for HAP3 subunit of HAP complex, complete cds.
GenBankAK1116211e-78AK111621.1 Oryza sativa Japonica Group cDNA clone:J013109P12, full insert sequence.
GenBankAK1121181e-78AK112118.1 Oryza sativa Japonica Group cDNA clone:002-139-C11, full insert sequence.
GenBankAP0051931e-78AP005193.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0493C06.
GenBankAP0064581e-78AP006458.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06.
GenBankAP0149631e-78AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645521.13e-30nuclear transcription factor Y subunit B-10
SwissprotQ69J403e-31NFYBA_ORYSJ; Nuclear transcription factor Y subunit B-10
TrEMBLA0A0E0AMG68e-29A0A0E0AMG6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0EE528e-29A0A0E0EE52_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QB038e-29A0A0E0QB03_ORYRU; Uncharacterized protein
TrEMBLA3BM068e-30A3BM06_ORYSJ; Uncharacterized protein
TrEMBLB8B8B78e-29B8B8B7_ORYSI; Uncharacterized protein
STRINGOGLUM07G21510.11e-29(Oryza glumipatula)
STRINGOMERI07G18360.11e-29(Oryza meridionalis)
STRINGORUFI07G22560.11e-29(Oryza rufipogon)
STRINGOS07T0606600-011e-29(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-24nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]