PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01011418.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 57aa    MW: 6087.01 Da    PI: 6.494
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01011418.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.3e-133474086
                           ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                     B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                           ++ g+sW   +  +++ ++  l +GW+eF+ +n+L +gD +vF+l+ 
  AMDW01011418.1_FGP001  3 HSGGKSWATSY--CGHLKMKKLDAGWSEFAVDNRLLVGDACVFELIA 47
                           5789*******..9******************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.914157IPR003340B3 DNA binding domain
PfamPF023622.7E-10247IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-10348IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-11447IPR015300DNA-binding pseudobarrel domain
CDDcd100179.64E-9546No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
VLHSGGKSWA TSYCGHLKMK KLDAGWSEFA VDNRLLVGDA CVFELIAMGA AGGLEFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01011418.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069203e-88AK106920.1 Oryza sativa Japonica Group cDNA clone:002-119-B04, full insert sequence.
GenBankAP0015523e-88AP001552.1 Oryza sativa Japonica Group geneomic DNA, chromosome 6, PAC clone:P0029D06.
GenBankAP0149623e-88AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126143e-88CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643738.14e-37B3 domain-containing protein Os06g0112300
RefseqXP_015643739.14e-37B3 domain-containing protein Os06g0112300
RefseqXP_025882046.14e-37B3 domain-containing protein Os06g0112300
SwissprotQ9LHY93e-38Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLA0A0E0HJU67e-36A0A0E0HJU6_ORYNI; Uncharacterized protein
TrEMBLA2Y8H37e-36A2Y8H3_ORYSI; Uncharacterized protein
STRINGOS06T0112300-011e-36(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]