PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AMDW01013172.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 53aa MW: 5686.32 Da PI: 3.5645

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AMDW01013172.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	21.5	2.6e-07	7	50	199	240
GRAS 199 gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvv 240 +Ea++Vn vl+l +l+des+ ++ +rd+vL +++++P v+v AMDW01013172.1_FGP001 7 EEAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFV 50 8****************98877779*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	8.9E-5	7	50	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 53 aa Download sequence Send to blast
VDPDPDEEAV VVNDVLSLGT LMDESGVFDD PSPRDTVLGS IRDMRPAVFV QAV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AMDW01013172.1_FGP001

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012619	1e-78	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025877156.1	8e-24	scarecrow-like protein 14
TrEMBL	A0A0E0F9B6	1e-25	A0A0E0F9B6_9ORYZ; Uncharacterized protein
STRING	OMERI12G00800.1	1e-26	(Oryza meridionalis)