PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01019491.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 44aa    MW: 5319.26 Da    PI: 10.6123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01019491.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.1e-111391154
                           HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           +RR+riN+++  L+el+P+      +K++ +++Le+A++Y+k L
  AMDW01019491.1_FGP001  1 NRRQRINERLRILQELIPNG-----TKVDISTMLEEAIQYVKFL 39
                           7*****************97.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000101.3E-8139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-12143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.215139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-11143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.26E-7144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 44 aa     Download sequence    Send to blast
NRRQRINERL RILQELIPNG TKVDISTMLE EAIQYVKFLH LQIK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01019491.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619477.25e-23transcription factor SPATULA isoform X1
SwissprotQ7XHI94e-20BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A0E0JAX41e-21A0A0E0JAX4_ORYNI; Uncharacterized protein
STRINGONIVA12G13790.12e-22(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-22bHLH family protein