PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01030203.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 87aa    MW: 10087.7 Da    PI: 11.4136
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01030203.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.7e-1516813296
                           --SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                     B3 32 esktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96
                           +  + ++ ++ g++W+  +  + ksgr     +l +GW++Fv++n+L +gD+++++l+++ s+ +++v+ 
  AMDW01030203.1_FGP001 16 R--QTVVLQRMGQRWDTVM--QTKSGRcttrRFLINGWSRFVRDNRLGVGDICLLELKKHdSKLTMTVHT 81
                           3..3556778*********..555555224445557*********************9776999888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.547183IPR003340B3 DNA binding domain
CDDcd100177.07E-13580No hitNo description
Gene3DG3DSA:2.40.330.102.8E-15780IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-14881IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-13982IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
ELGARYAAAV HLPDRRQTVV LQRMGQRWDT VMQTKSGRCT TRRFLINGWS RFVRDNRLGV  60
GDICLLELKK HDSKLTMTVH TIFSQQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01030203.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-128CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633049.17e-34B3 domain-containing protein Os03g0619600
RefseqXP_015633050.17e-34B3 domain-containing protein Os03g0619600
SwissprotQ6AV226e-35Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A0E0D3R42e-55A0A0E0D3R4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0D3R52e-55A0A0E0D3R5_9ORYZ; Uncharacterized protein
STRINGOMERI03G23090.13e-56(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]