PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01030762.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 124aa    MW: 12586.7 Da    PI: 4.5852
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01030762.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.29.1e-1014472559
                           EEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY 25 YrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                           Y+C+ ++C v+k + rsa d++++e++ +g Hnh+
  AMDW01030762.1_FGP001 14 YQCALPNCGVRKSITRSA-DGQTIETVCKGCHNHP 47
                           9*****************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.83E-7348IPR003657WRKY domain
PfamPF031063.0E-7347IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-61448IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
STIQGGLCPT VFSYQCALPN CGVRKSITRS ADGQTIETVC KGCHNHPRQS LRWLGDGSER  60
LEPISQEIVL LEASDASGAA GGPSVPGTGN GHGQSSGSSD SCRDDDGDLG IDGNASVGDA  120
NAVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01030762.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1036960.0AK103696.1 Oryza sativa Japonica Group cDNA clone:J033136J23, full insert sequence.
GenBankAP0054160.0AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648157.12e-80zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015648158.12e-80zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2
TrEMBLI1QGE91e-81I1QGE9_ORYGL; Uncharacterized protein
TrEMBLQ0J7E95e-79Q0J7E9_ORYSJ; Os08g0198900 protein
STRINGORGLA08G0050000.12e-82(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-09WRKY DNA-binding protein 33