PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01031407.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 58aa    MW: 6639.59 Da    PI: 3.8882
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01031407.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.75.9e-161258148
                    NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                           +ppGf+F+Ptde+lvv+yL+k+++++++ +   i+++diy+v+Pw+Lp
  AMDW01031407.1_FGP001 12 MPPGFQFQPTDEQLVVDYLQKRTAAQPCVT-PDITDIDIYNVDPWQLP 58
                           79*************************988.55**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-16458IPR003441NAC domain
PROSITE profilePS5100519.1461258IPR003441NAC domain
PfamPF023652.1E-61355IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 58 aa     Download sequence    Send to blast
MAMTPQLAFS RMPPGFQFQP TDEQLVVDYL QKRTAAQPCV TPDITDIDIY NVDPWQLP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01031407.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072835e-81AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence.
GenBankAP0040395e-81AP004039.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1006_D05.
GenBankAP0149585e-81AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankEF1224795e-81EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625739.15e-34NAC domain-containing protein 48-like
SwissprotO492552e-14NAC29_ARATH; NAC transcription factor 29
TrEMBLA0A0E0CHV12e-32A0A0E0CHV1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0G3L41e-32A0A0E0G3L4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NBM61e-32A0A0E0NBM6_ORYRU; Uncharacterized protein
TrEMBLA0A1L3MZG81e-32A0A1L3MZG8_ORYSI; NAC protein
TrEMBLB8AE671e-32B8AE67_ORYSI; Uncharacterized protein
TrEMBLI1NYJ81e-32I1NYJ8_ORYGL; Uncharacterized protein
TrEMBLQ6H8A91e-32Q6H8A9_ORYSJ; NAC6
STRINGORUFI02G08550.12e-33(Oryza rufipogon)
STRINGOS02T0214500-012e-33(Oryza sativa)
STRINGONIVA02G09840.12e-33(Oryza nivara)
STRINGORGLA02G0080400.13e-33(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165401213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.17e-17NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Zhang K,Gan SS
    An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves.
    Plant Physiol., 2012. 158(2): p. 961-9
    [PMID:22184656]
  2. Zhang K,Halitschke R,Yin C,Liu CJ,Gan SS
    Salicylic acid 3-hydroxylase regulates Arabidopsis leaf longevity by mediating salicylic acid catabolism.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(36): p. 14807-12
    [PMID:23959884]
  3. Shinozaki Y, et al.
    Expression of an AtNAP gene homolog in senescing morning glory (Ipomoea nil) petals of two cultivars with a different flower life span.
    J. Plant Physiol., 2014. 171(8): p. 633-8
    [PMID:24709156]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  6. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]