PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01031827.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 32aa    MW: 3958.64 Da    PI: 11.0496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01031827.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.5e-11228430
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                    HLH  4 ahnerErrRRdriNsafeeLrellPka 30
                           +h ++Er+RR+++N+ ++ Lr+l+P++
  AMDW01031827.1_FGP001  2 THIAVERNRRRQMNEYLAVLRSLMPEP 28
                           8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.963132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-8228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-8229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-8228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 32 aa     Download sequence    Send to blast
MTHIAVERNR RRQMNEYLAV LRSLMPEPYV QR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01031827.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606959e-44AK060695.1 Oryza sativa Japonica Group cDNA clone:001-030-D07, full insert sequence.
GenBankAP0041189e-44AP004118.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1148_D05.
GenBankAP0149589e-44AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.19e-15bHLH family protein