PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01032265.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 124aa    MW: 14022.9 Da    PI: 9.7761
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01032265.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.6e-181751797
                           E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                     B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                           ++p kfa+++gg+   s t++le+++g+++ev++   k  +  vl++GW++F++a +L  gD++vF  +g+s f  +v ++
  AMDW01032265.1_FGP001  1 TIPAKFARNFGGQM--SGTVKLETRNGKTYEVQV--AKELNNLVLRSGWERFASAYELVKGDILVFIQSGNSHF--KVWIY 75
                           59*****9999994..559***************..*******************************8888888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.7E-5178IPR003340B3 DNA binding domain
CDDcd100171.89E-20176No hitNo description
PfamPF023621.5E-15175IPR003340B3 DNA binding domain
PROSITE profilePS5086314.099178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-21288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-20280IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
TIPAKFARNF GGQMSGTVKL ETRNGKTYEV QVAKELNNLV LRSGWERFAS AYELVKGDIL  60
VFIQSGNSHF KVWIYDPSAC EKELPCIITE QLPRVQQRSI SHDNHTQLKR NAKSAKLYVD  120
SSGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01032265.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878051.18e-81B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT64e-82Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A0P0YD971e-81A0A0P0YD97_ORYSJ; Os12g0591500 protein
TrEMBLB8BMS93e-81B8BMS9_ORYSI; Uncharacterized protein
STRINGOS12T0591500-002e-82(Oryza sativa)
STRINGORGLA12G0150200.11e-81(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-12B3 family protein