PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AMDW01035599.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 160aa MW: 17957.7 Da PI: 5.0509

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AMDW01035599.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	100.3	2.7e-31	3	160	47	203
GRAS 47 eALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqa 131 La+rl+r v+ + +al ps + ++ aa++ f+e+sP++k+++++ N+aI+eave+e+ vH++ ++ +q+ QW+ Ll++ AMDW01035599.1_FGP001 3 DCLARRLLRPVQAITDALiDPSVYL--DRRSVRAARRGFFELSPFPKVAFVVGNRAIVEAVENESLVHVVGMSgpFTQPCQWIQLLHE 88 6799999999999999985444443..34555578899********************************86679******* PP GRAS 132 LasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEala 203 L Rpegpp +R+T+v++ + e l +++e ++ Aeelg++f+f+ v+ +ledl++++L ++k+gEal+ AMDW01035599.1_FGP001 89 LRRRPEGPPrVVRLTVVHD----DGELLAKMAELVSDEAEELGMEFQFHG-VVGQLEDLDFSNLrnvlEIKSGEALV 160 *9988789***....***********************.7999**999985555677788875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.914	1	160	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.5E-29	3	160	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MVDCLARRLL RPVQAITDAL IDPSVYLDRR SVRAARRGFF ELSPFPKVAF VVGNRAIVEA 60 VENESLVHVV GMSGPFTQPC QWIQLLHELR RRPEGPPRVV RLTVVHDDGE LLAKMAELVS 120 DEAEELGMEF QFHGVVGQLE DLDFSNLRNV LEIKSGEALV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AMDW01035599.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012619	0.0	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616103.1	1e-109	scarecrow-like protein 3
TrEMBL	A0A0E0BF50	1e-110	A0A0E0BF50_9ORYZ; Uncharacterized protein
STRING	OGLUM11G02280.1	1e-110	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	4e-20	scarecrow-like 3