PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01035649.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 85aa    MW: 9781.26 Da    PI: 10.235
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01035649.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.11.6e-093882146
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46
                           +fYn YA + GF +r +k + + ++++ t+r+ +Cs +g++ ++kk
  AMDW01035649.1_FGP001 38 NFYNVYAVSKGFGIRLDKDRMN-TKKQRTMRQICCSHQGRNPKTKK 82
                           6****************99998.5555999**********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-63882IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MVVDNVDSSA VIPPEYADPQ ILTPMLGQRF KTERDAYNFY NVYAVSKGFG IRLDKDRMNT  60
KKQRTMRQIC CSHQGRNPKT KKPSV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01035649.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354211e-121AC135421.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0012G21, complete sequence.
GenBankAL6064551e-121AL606455.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02, complete sequence.
GenBankAL7316071e-121AL731607.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18, complete sequence.
GenBankAP0149601e-121AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAP0149611e-121AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880974.12e-58uncharacterized protein LOC112938787
RefseqXP_025881544.19e-54protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0P0WFM77e-56A0A0P0WFM7_ORYSJ; Os04g0641500 protein
TrEMBLQ7X7531e-52Q7X753_ORYSJ; OSJNBa0063C18.5 protein
STRINGOS04T0354200-001e-52(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1594035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.26e-08FAR1 family protein