PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01035831.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 74aa    MW: 8162.15 Da    PI: 10.2252
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01035831.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.74e-312474151
                G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                           ++rlrWt+eLHerFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQ
  AMDW01035831.1_FGP001 24 RQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQ 74
                           58************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3612174IPR017930Myb domain
SuperFamilySSF466894.48E-162374IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-292374IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-232574IPR006447Myb domain, plants
PfamPF002491.4E-82674IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
HMESGGNNMG PDNGANNNSN LAARQRLRWT NELHERFVEA VTQLGGPDRA TPKGVLRIMG  60
VQGLTIYHVK SHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-232474151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-232474151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-232474151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-232474151Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00628PBMTransfer from PK10342.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01035831.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032411e-118AK103241.1 Oryza sativa Japonica Group cDNA clone:J033123H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696864.16e-47PREDICTED: protein PHR1-LIKE 1-like isoform X1
RefseqXP_015696865.15e-47PREDICTED: protein PHR1-LIKE 1-like isoform X2
SwissprotQ9SJW01e-29PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0P0XKY32e-45A0A0P0XKY3_ORYSJ; Os09g0299200 protein (Fragment)
STRINGOS09T0299200-013e-46(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.14e-31G2-like family protein