PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01036477.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 37aa    MW: 4163.91 Da    PI: 10.8492
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01036477.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.64.3e-161292755
                G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55
                           AtPk +l+lm+v gL++ hvkSHLQ+YR+
  AMDW01036477.1_FGP001  1 ATPKLVLQLMNVRGLSIGHVKSHLQMYRS 29
                           9***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.31E-5130IPR009057Homeodomain-like
PROSITE profilePS512949.427132IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-14130IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-11131IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 37 aa     Download sequence    Send to blast
ATPKLVLQLM NVRGLSIGHV KSHLQMYRSK KIDESGQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01036477.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411713e-53AK241171.1 Oryza sativa Japonica Group cDNA, clone: J065117O05, full insert sequence.
GenBankGU0467893e-53GU046789.1 Oryza sativa Japonica Group cultivar Dongjin-byeo myb-like DNA-binding domain-containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620339.13e-17probable transcription factor RL9
TrEMBLA0A0E0F1F34e-17A0A0E0F1F3_9ORYZ; Uncharacterized protein
STRINGOGLUM12G00290.19e-17(Oryza glumipatula)
STRINGOMERI11G00620.32e-17(Oryza meridionalis)
STRINGORUFI12G00420.19e-17(Oryza rufipogon)
STRINGOS11T0106100-002e-17(Oryza sativa)
STRINGOS12T0105600-011e-16(Oryza sativa)
STRINGONIVA12G00410.19e-17(Oryza nivara)
STRINGOPUNC11G00360.21e-16(Oryza punctata)
STRINGLPERR11G00400.11e-16(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.16e-17G2-like family protein