PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01037002.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 126aa    MW: 14152.3 Da    PI: 6.3875
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01037002.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS44.82e-14201252109
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevs 88 
                            v lL ecA +v++g++e+a+   ++++ l   ++ p+qRl + ++  La+rl++s ++l  al  ps+    + s+  aa++ f+++ 
  AMDW01037002.1_FGP001  20 VPLLHECASHVTEGSFEKADFSFKKIRMLT-IADGPLQRLSTIIVDSLAHRLLSSIQGLPGALiDPSDYF--EKSTLRAAHHNFFKLN 104
                            6799**********************9876.5667*******************9999998884444444..35555567778***** PP

                   GRAS  89 PilkfshltaNqaIleavege 109
                            P+l  +++t N+aI+ea+e e
  AMDW01037002.1_FGP001 105 PYLSTGFVTINRAIMEAMEDE 125
                            ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.5471126IPR005202Transcription factor GRAS
PfamPF035147.0E-1220125IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MMHGLWVQDQ GMVDHLAQLV PLLHECASHV TEGSFEKADF SFKKIRMLTI ADGPLQRLST  60
IIVDSLAHRL LSSIQGLPGA LIDPSDYFEK STLRAAHHNF FKLNPYLSTG FVTINRAIME  120
AMEDEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01037002.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427940.0AK242794.1 Oryza sativa Japonica Group cDNA, clone: J090058A05, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616660.15e-83scarecrow-like protein 3 isoform X1
RefseqXP_015616661.11e-84scarecrow-like protein 3 isoform X2
TrEMBLA0A0P0XYU04e-86A0A0P0XYU0_ORYSJ; Os11g0141550 protein
STRINGOS11T0141550-017e-87(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5381422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-13scarecrow-like 3