PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01037255.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 141aa    MW: 15929.8 Da    PI: 6.1089
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01037255.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.11.6e-1960141288
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            fY++YA+++GF v k+ skk+ ++g++   t+ Cs++gk++ ++++   + +++++tr +C ak++  ++ d+k+++++l l+HnH+
  AMDW01037255.1_FGP001  60 FYKSYARKLGFGVIKRGSKKT-KDGKVRYFTLACSRQGKAQYTSTN---KFKPNPSTRQQCPAKVNFYLH-DEKFCISTLTLDHNHA 141
                            9***************99998.7888****************9888...99******************9.9**************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1660141IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
VMDTNLCSDD EQEDHIISEE DDFAVEEVES DSNALVADKT KLLEPAKGML FDSEDSATCF  60
YKSYARKLGF GVIKRGSKKT KDGKVRYFTL ACSRQGKAQY TSTNKFKPNP STRQQCPAKV  120
NFYLHDEKFC ISTLTLDHNH A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17381KRGSKKTKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01037255.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1369980.0AC136998.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0082P17, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171727.11e-43protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_020171728.11e-43protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_020171729.11e-43protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_020171730.11e-43protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_020171731.11e-43protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_020171732.11e-43protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2
RefseqXP_020171733.11e-43protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2
RefseqXP_020171734.11e-43protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2
RefseqXP_020171735.11e-43protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2
TrEMBLJ3LBW73e-78J3LBW7_ORYBR; Uncharacterized protein
STRINGOB02G21340.16e-79(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.14e-16FAR1 family protein