PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01037601.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 117aa    MW: 13267.6 Da    PI: 9.9656
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01037601.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS54.72e-1732114289
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            + lL++cA+a+++++++ a +lL++++++   +gd+mqR+a+yf+++L+arla s+++ly+     +    + +e l+++kl+  ++ 
  AMDW01037601.1_FGP001  32 RLLLIQCAQAMATDNQQSAGELLKKIKQHTLATGDAMQRVAHYFAKGLEARLACSGKHLYQN--QVRL---SLVEYLKVYKLYMAACC 114
                            669********************************************************963..2222...26788888888887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.9065117IPR005202Transcription factor GRAS
PfamPF035147.1E-1532114IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MEKLRIDMDN EAEKKINKKD KKGSSSKVVD LRLLLIQCAQ AMATDNQQSA GELLKKIKQH  60
TLATGDAMQR VAHYFAKGLE ARLACSGKHL YQNQVRLSLV EYLKVYKLYM AACCFTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15358LKKIKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01037601.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370641e-176AC137064.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence.
GenBankAP0149671e-176AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126191e-176CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616386.15e-60scarecrow-like protein 9
TrEMBLA0A0E0MIE53e-62A0A0E0MIE5_ORYPU; Uncharacterized protein
STRINGOPUNC11G20020.15e-63(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-24GRAS family protein