PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AMDW01038559.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 60aa MW: 6942.02 Da PI: 5.7762

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AMDW01038559.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29	2.6e-09	30	59	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg+WT eEd ll ++++ +G g+W++ ar+ AMDW01038559.1_FGP001 30 RGPWTLEEDNLLMNYIACHGEGRWNLLARC 59 89*************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.8	25	60	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-10	26	58	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.65E-8	27	58	IPR009057	Homeodomain-like
Pfam	PF00249	3.9E-7	30	58	IPR001005	SANT/Myb domain
CDD	cd00167	3.43E-5	32	59	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 60 aa Download sequence Send to blast
MSQRRVAGPM GVMSKQQQEA MAEEMMELRR GPWTLEEDNL LMNYIACHGE GRWNLLARCS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AMDW01038559.1_FGP001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt (NaCl). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107424	9e-92	AK107424.1 Oryza sativa Japonica Group cDNA clone:002-127-F10, full insert sequence.
GenBank	AP002860	9e-92	AP002860.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0409B08.
GenBank	AP014957	9e-92	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	9e-92	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633684.1	2e-35	transcription factor MYB62 isoform X1
Refseq	XP_015633690.1	1e-35	transcription factor MYB62 isoform X2
Swissprot	Q9FGY3	1e-13	MYB78_ARATH; Transcription factor MYB78
TrEMBL	A0A0D3EJ64	4e-34	A0A0D3EJ64_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9Y2R2	3e-34	A0A0D9Y2R2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0FFP8	3e-34	A0A0E0FFP8_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0JDL3	3e-34	A0A0E0JDL3_ORYPU; Uncharacterized protein
TrEMBL	A0A0E0MQW3	4e-34	A0A0E0MQW3_ORYRU; Uncharacterized protein
TrEMBL	B8AD22	4e-34	B8AD22_ORYSI; Uncharacterized protein
TrEMBL	I1NJX5	4e-34	I1NJX5_ORYGL; Uncharacterized protein
TrEMBL	Q0JR06	4e-34	Q0JR06_ORYSJ; Os01g0128000 protein
STRING	OGLUM01G02010.1	6e-35	(Oryza glumipatula)
STRING	ORUFI01G01910.1	7e-35	(Oryza rufipogon)
STRING	OS01T0128000-01	7e-35	(Oryza sativa)
STRING	ONIVA01G01990.1	6e-35	(Oryza nivara)
STRING	OPUNC01G01580.1	5e-35	(Oryza punctata)
STRING	ORGLA01G0016500.1	6e-35	(Oryza glaberrima)
STRING	OBART01G01830.1	6e-35	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.2	1e-13	myb domain protein 78

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]