PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AMDW01038896.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 161aa MW: 18605.1 Da PI: 9.6909

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AMDW01038896.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4.1e-10	3	38	8	43
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 rr+++NReAAr+sR+RKka+i++Le+ +L + + AMDW01038896.1_FGP001 3 RRLAQNREAARKSRLRKKAYIQQLETSRLKLAQLEQ 38 9************************85444443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50217	8.703	1	42	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.0E-4	1	60	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.5E-8	3	39	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-8	3	51	No hit	No description
PROSITE pattern	PS00036	0	3	18	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.01E-7	3	46	No hit	No description
Pfam	PF14144	6.3E-26	88	161	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
VLRRLAQNRE AARKSRLRKK AYIQQLETSR LKLAQLEQEL QRARQQAVYA NGSLREPNLG 60 FTGPIDPGAL GFEIKYSHWV DEQNRNTGEL RNALLQGQTS DQDLELKLLV EAGLDNYSRL 120 FEMKEEAANS DVFYIMSGMW KTPTERFFLW IGGFRPSEVL K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AMDW01038896.1_FGP001

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073715	0.0	AK073715.1 Oryza sativa Japonica Group cDNA clone:J033059P06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636710.1	1e-112	transcription factor TGAL6 isoform X1
Refseq	XP_015636711.1	1e-112	transcription factor TGAL6 isoform X1
Refseq	XP_015636712.1	1e-112	transcription factor TGAL6 isoform X1
Refseq	XP_015636713.1	1e-112	transcription factor TGAL6 isoform X2
Refseq	XP_015636714.1	1e-112	transcription factor TGAL6 isoform X2
Refseq	XP_015636715.1	1e-112	transcription factor TGAL6 isoform X2
Refseq	XP_025880677.1	1e-112	transcription factor TGAL6 isoform X1
Refseq	XP_025880678.1	1e-112	transcription factor TGAL6 isoform X3
Swissprot	A0A0P0WFC8	1e-113	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A0D3G046	1e-111	A0A0D3G046_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D3G049	1e-111	A0A0D3G049_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9ZRD4	1e-111	A0A0D9ZRD4_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9ZRD8	1e-111	A0A0D9ZRD8_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0GKM9	1e-111	A0A0E0GKM9_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0PEM0	1e-111	A0A0E0PEM0_ORYRU; Uncharacterized protein
TrEMBL	A0A0E0PEM4	1e-111	A0A0E0PEM4_ORYRU; Uncharacterized protein
TrEMBL	A2XY14	1e-111	A2XY14_ORYSI; Uncharacterized protein
TrEMBL	I1PPQ2	1e-111	I1PPQ2_ORYGL; Uncharacterized protein
STRING	OGLUM04G26680.1	1e-111	(Oryza glumipatula)
STRING	OS04T0637000-01	1e-111	(Oryza sativa)
STRING	ONIVA03G13630.1	1e-111	(Oryza nivara)
STRING	ORGLA04G0217100.1	1e-112	(Oryza glaberrima)
STRING	OBART04G25140.2	1e-111	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.6	5e-57	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]