PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01039452.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 173aa    MW: 18555.1 Da    PI: 5.2531
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01039452.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY50.63.7e-161382359
                           EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY 23 sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                           +YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  AMDW01039452.1_FGP001  1 GYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 38
                           5*****998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.875140IPR003657WRKY domain
PfamPF031065.0E-13138IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-15140IPR003657WRKY domain
SMARTSM007741.2E-8139IPR003657WRKY domain
SuperFamilySSF1182906.02E-13240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
GYYRCSSSKG CSARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST RSHHSKNSGG  60
GGGSGSKGSQ NDKSQQQPSV KEEQKDQATT TATTTTTSTI TTTNSASPVV VKEEEAALAG  120
SSEALELERV MDTTAAGVVD HSELMDHVFS ESYKPMIPET GQPDDFFADL AEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01039452.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109120.0AK110912.1 Oryza sativa Japonica Group cDNA clone:002-173-C03, full insert sequence.
GenBankAL6070040.0AL607004.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634477.13e-92probable WRKY transcription factor 4
TrEMBLB9FC953e-91B9FC95_ORYSJ; Uncharacterized protein
TrEMBLQ0JAI81e-91Q0JAI8_ORYSJ; Os04g0597300 protein
STRINGOS04T0597300-012e-92(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.19e-32WRKY DNA-binding protein 35