PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01040121.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 232aa    MW: 24691.4 Da    PI: 6.4985
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01040121.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.41.3e-221979359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
                   WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59
                           Dgy+WrKYGqK+++g+ +prsYYrCt +   gC +kk v+r+   + +  ++ Y +eH+++
  AMDW01040121.1_FGP001 19 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 79
                           9************************9888889**********98776537899*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-24280IPR003657WRKY domain
SuperFamilySSF1182901.31E-211079IPR003657WRKY domain
SMARTSM007742.8E-311780IPR003657WRKY domain
PROSITE profilePS5081119.521960IPR003657WRKY domain
PfamPF031061.7E-221979IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
RRKQQTTTST MVTTVPDFDG YQWRKYGQKQ IEGAMYPRSY YRCTNSTNQG CLAKKTVQRN  60
GGGGAAGYTV AYISEHTCKS IQPSLPPVIL DTTVRTTNNH HPPAAAPVVT AVAESAARAR  120
ARSPATSSSS DMVMTSTSGD TGNWSGLHGA YACRQMIAAD EDCWGDTPAA TTTTSGSDGG  180
NSTCAEEMEL LSGPIRSPLH IAADGNWMDD LLLVSDGLID ISSANITHLF SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-1419791069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01040121.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235141e-100AC123514.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence.
GenBankAP0149671e-100AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126191e-100CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616434.11e-112probable WRKY transcription factor 33
TrEMBLA0A0E0F1X91e-114A0A0E0F1X9_9ORYZ; Uncharacterized protein
STRINGORGLA11G0202100.11e-114(Oryza glaberrima)
STRINGOBART11G01120.11e-114(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-15WRKY DNA-binding protein 46