PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01040228.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 120aa    MW: 14041.6 Da    PI: 9.9243
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01040228.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.46.5e-232385163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                           e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l s++
  AMDW01040228.1_FGP001 23 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENASLRDEVNRIRKEYDELLSKN 85
                           89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.8E-181781No hitNo description
SMARTSM003383.0E-212387IPR004827Basic-leucine zipper domain
PfamPF001701.0E-212385IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.4152588IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-122682No hitNo description
CDDcd147021.82E-142879No hitNo description
PROSITE patternPS0003603045IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MKFSVFLANG EISRADSPMI QDERELKRQR RKQSNRESAR RSRLRKQAEC EELAQRAEVL  60
KQENASLRDE VNRIRKEYDE LLSKNSSLKE KLEDKQHKTD EAGVDNKLQH SGDDSQKKGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945RRSRLRK
23946RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01040228.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.2). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.2). {ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687660.0AK068766.1 Oryza sativa Japonica Group cDNA clone:J013164D05, full insert sequence.
GenBankAK1213600.0AK121360.1 Oryza sativa Japonica Group cDNA clone:J023123F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663922.15e-63PREDICTED: transcription factor HBP-1a-like
SwissprotA0A3B6KF132e-50BZP1A_WHEAT; bZIP transcription factor 1-A
TrEMBLJ3NCC31e-61J3NCC3_ORYBR; Uncharacterized protein
STRINGOMERI12G04600.33e-65(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.15e-25basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]