PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01040699.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 145aa    MW: 15552.3 Da    PI: 6.8876
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01040699.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27.4e-164076135
                   GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  AMDW01040699.1_FGP001 40 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 76
                           **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.0E-103488IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-113789No hitNo description
Gene3DG3DSA:3.30.50.102.7E-143878IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.4E-134076IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404067IPR000679Zinc finger, GATA-type
CDDcd002022.13E-124086No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MKRRKGQFAG RADFGDGSCS SAPCGSTANG EDDHIRETHC QNCGISSRLT PAMRRGPAGP  60
RSLCNACGLM WANKGTLRSP LNAPKMTVQH PADLSKTGDT DDSKANLCAE HNQTTMKTDT  120
EMVPEQEQKA DVLPPTKEED SMATS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01040699.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880760.0AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632019.11e-105GATA transcription factor 19 isoform X1
RefseqXP_015632020.11e-105GATA transcription factor 19 isoform X2
SwissprotB8AR301e-106GAT19_ORYSI; GATA transcription factor 19
SwissprotQ0DNU11e-106GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A0E0GTG61e-103A0A0E0GTG6_ORYNI; Uncharacterized protein
STRINGOS03T0734900-001e-104(Oryza sativa)
STRINGONIVA03G34920.11e-104(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.31e-21GATA-type zinc finger protein with TIFY domain