PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01040774.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 485aa    MW: 55700.4 Da    PI: 7.8485
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01040774.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.68.5e-2380170289
                   FAR1   2 fYneYAkevGFsvrkskskkskrnge..itkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                            fYn+YA ++GF +r+++s++++r+g    ++++fvC keg++++++ + ++k++r+r + r gC a+++v ++  +kw+++kl+leH+
  AMDW01040774.1_FGP001  80 FYNAYALRLGFGIRVARSRSERRKGVelLIMKRFVCLKEGHHKKKDAEpSDKKKRKRLSIRDGCPAMMEVVRRGPEKWVIKKLVLEHT 167
                            9**************999999776542389************9999987899999********************************* PP

                   FAR1  87 Hel 89 
                            H +
  AMDW01040774.1_FGP001 168 HVI 170
                            *76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2080170IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.26358390IPR007527Zinc finger, SWIM-type
PfamPF044344.4E-7360388IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEYTSSEDDE LVEGYMDVED DTGTSNTDQG TGLMPSEMRS IRPRPSSVGN GRLMAADGLG  60
TNDDPCLGME FESDGAARAF YNAYALRLGF GIRVARSRSE RRKGVELLIM KRFVCLKEGH  120
HKKKDAEPSD KKKRKRLSIR DGCPAMMEVV RRGPEKWVIK KLVLEHTHVI LSPDRVREVQ  180
LHRFSGKRCI NECYTEVAFD MFWGTILDKY GLRENSWLRS IFEARHRWVP AYLTTSSFFA  240
ELTLTQRGET IGRFFRNNFS TRVPLDEFIT KFDQHIDSLY IHETQKDLAS SHPEQILKTN  300
IALEKQARST YTNAVFEIFQ TELFEALQHY AVKVHQDGPY SKYYVDRDDP PTRHTVFYNV  360
AEKKAWCDCC RYAFSAILCR HVLGVFILAG IMVLPETCIA KRWTKRAKTG PELIGHNLEN  420
GNCYMDSSTS RYNDLIHDAI KCAEKGAVSA DNFRVAKEIL RKAFMEIKCL GEKLTDDDLQ  480
QVDSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121135KKKDAEPSDKKKRKR
2129136DKKKRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01040774.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200830.0AK120083.1 Oryza sativa Japonica Group cDNA clone:J013014J20, full insert sequence.
GenBankAP0036230.0AP003623.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0642B07.
GenBankAP0042360.0AP004236.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0417D05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641232.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_025882193.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1Q3E80.0I1Q3E8_ORYGL; Uncharacterized protein
TrEMBLQ0DB680.0Q0DB68_ORYSJ; Os06g0597800 protein
STRINGOS06T0597800-010.0(Oryza sativa)
STRINGORGLA06G0166100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.24e-47FAR1-related sequence 3