PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01040844.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 167aa    MW: 19488.1 Da    PI: 7.9428
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01040844.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.13.7e-131149240
                    TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                           ++++C+C ks+C+k+YC Cf+a  +Cs++C+C++CkN+e
  AMDW01040844.1_FGP001 11 QHRSCRCVKSNCVKLYCPCFSAYGYCSQNCHCTNCKNRE 49
                           6789*********************************87 PP
2TCR33.96.2e-1188123439
                    TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                            +gC+C+kskCl   CeC ++++ C+++C+C dC N 
  AMDW01040844.1_FGP001  88 NGCRCQKSKCLVHSCECLKHEVRCTSKCQCIDCGNG 123
                            79*******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.7E-101051IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163427.75911125IPR005172CRC domain
PfamPF036382.2E-101349IPR005172CRC domain
SMARTSM011143.2E-485126IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-888122IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
LISARSMSND QHRSCRCVKS NCVKLYCPCF SAYGYCSQNC HCTNCKNREY YEDFVEERVD  60
MIKMKNPRAF DPKIVRVQDE NEQWMYANGC RCQKSKCLVH SCECLKHEVR CTSKCQCIDC  120
GNGPRTKYDS NIGKDQSDVS GLTYEEPTMD TMQSEHTLYP NKRPKYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-121312212120Protein lin-54 homolog
5fd3_B2e-121312212120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01040844.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315894e-81AL731589.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence.
GenBankAP0149604e-81AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0DAU41e-98A0A0E0DAU4_9ORYZ; Uncharacterized protein
STRINGOMERI04G02540.21e-101(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.18e-24Tesmin/TSO1-like CXC domain-containing protein