PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01125615.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 97aa    MW: 11259 Da    PI: 11.8124
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01125615.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.62.7e-3258954128
                    NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +++ewyfFs rd+kyatg r+nratksgyWkatgkd+ +++           + + vg++ktLvfy+grap+g+kt+Wvmhe+r+
  AMDW01125615.1_FGP001   5 STNEWYFFSFRDRKYATGLRTNRATKSGYWKATGKDRVIHNPklhaaaaahrRASIVGMRKTLVFYRGRAPNGVKTNWVMHEFRM 89 
                            568*************************************9877776666555555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.162197IPR003441NAC domain
SuperFamilySSF1019416.67E-33394IPR003441NAC domain
PfamPF023652.8E-16989IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
VAKLSTNEWY FFSFRDRKYA TGLRTNRATK SGYWKATGKD RVIHNPKLHA AAAAHRRASI  60
VGMRKTLVFY RGRAPNGVKT NWVMHEFRME NPHTPPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-2529266145NO APICAL MERISTEM PROTEIN
1ut4_B1e-2529266145NO APICAL MERISTEM PROTEIN
1ut7_A1e-2529266145NO APICAL MERISTEM PROTEIN
1ut7_B1e-2529266145NO APICAL MERISTEM PROTEIN
3swm_A1e-2529269148NAC domain-containing protein 19
3swm_B1e-2529269148NAC domain-containing protein 19
3swm_C1e-2529269148NAC domain-containing protein 19
3swm_D1e-2529269148NAC domain-containing protein 19
3swp_A1e-2529269148NAC domain-containing protein 19
3swp_B1e-2529269148NAC domain-containing protein 19
3swp_C1e-2529269148NAC domain-containing protein 19
3swp_D1e-2529269148NAC domain-containing protein 19
4dul_A1e-2529266145NAC domain-containing protein 19
4dul_B1e-2529266145NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01125615.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0609761e-138AK060976.1 Oryza sativa Japonica Group cDNA clone:006-202-E09, full insert sequence.
GenBankAK0709821e-138AK070982.1 Oryza sativa Japonica Group cDNA clone:J023075A01, full insert sequence.
GenBankAP0040811e-138AP004081.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1116_E04.
GenBankAP0053031e-138AP005303.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0016F11.
GenBankAP0149581e-138AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623778.13e-62protein CUP-SHAPED COTYLEDON 1
SwissprotQ84TE64e-36NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0D9YZZ23e-64A0A0D9YZZ2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CSW84e-64A0A0E0CSW8_9ORYZ; Uncharacterized protein
STRINGOGLUM02G38020.25e-65(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2506755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-45NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]