PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01132047.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 72aa    MW: 7875.93 Da    PI: 8.2278
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01132047.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260651.8e-202170150
                 DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50
                           +CaaCk+lrr+C++dCvlap+fpa++p+++a+v+++FGa n  ++l+ + 
  AMDW01132047.1_FGP001 21 RCAACKFLRRRCPRDCVLAPHFPASDPHRYACVQRVFGAGNTARMLQVIT 70
                           6*********************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2752072IPR004883Lateral organ boundaries, LOB
PfamPF031958.0E-192170IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MSPGEEDVEA SSDSGGSAIR RCAACKFLRR RCPRDCVLAP HFPASDPHRY ACVQRVFGAG  60
NTARMLQVIT DH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01132047.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0870961e-106AC087096.11 Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence.
GenBankAP0149591e-106AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-106CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690105.15e-28PREDICTED: LOB domain-containing protein 24-like
SwissprotP594683e-22LBD24_ARATH; LOB domain-containing protein 24
TrEMBLI1PG843e-44I1PG84_ORYGL; Uncharacterized protein
STRINGORGLA03G0338000.15e-45(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1972078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-24LOB domain-containing protein 24