PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01136750.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 44aa    MW: 5232.15 Da    PI: 9.949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01136750.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.7e-112401255
                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  AMDW01136750.1_FGP001  2 RRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 40
                           9*****************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.367139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0011144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-13243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-6244No hitNo description
PfamPF000105.3E-8240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-13343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 44 aa     Download sequence    Send to blast
LRRERIAERM KSLQELVPNA NKTDKASMLD EIIDYVKFLQ LQVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01136750.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620762e-39BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279382e-39KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437967.12e-22transcription factor bHLH66
RefseqXP_003560994.12e-22transcription factor bHLH82
RefseqXP_004964663.12e-22transcription factor bHLH82 isoform X2
RefseqXP_010548502.11e-22PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH66
RefseqXP_015642979.12e-22transcription factor bHLH66
RefseqXP_015693472.11e-22PREDICTED: transcription factor bHLH69-like
RefseqXP_017249202.12e-22PREDICTED: transcription factor bHLH66 isoform X1
RefseqXP_017249203.12e-22PREDICTED: transcription factor bHLH66 isoform X2
RefseqXP_018462686.13e-23PREDICTED: transcription factor bHLH69-like
RefseqXP_020163941.12e-22transcription factor bHLH66-like
RefseqXP_022027547.11e-22transcription factor bHLH82-like
RefseqXP_022681560.12e-22transcription factor bHLH82 isoform X1
RefseqXP_023733802.12e-22transcription factor bHLH66-like
RefseqXP_024961039.12e-22transcription factor bHLH66
RefseqXP_025812266.12e-22transcription factor bHLH82-like isoform X1
RefseqXP_025812267.12e-22transcription factor bHLH82-like isoform X2
SwissprotQ8S3D52e-23BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A287VX504e-23A0A287VX50_HORVV; Uncharacterized protein
TrEMBLA0A446X4W24e-23A0A446X4W2_TRITD; Uncharacterized protein
TrEMBLM7YN074e-23M7YN07_TRIUA; Transcription factor bHLH69
STRINGMLOC_38567.19e-23(Hordeum vulgare)
STRINGTRIUR3_33471-P17e-24(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-25LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]