PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G04445.1
Common NameF19P19.9
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 172aa    MW: 19204.5 Da    PI: 9.1311
Description C2H2-like zinc finger protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G04445.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039830223
                 EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                 +C  C+++F ++++L +H +  H
  AT1G04445.1  8 ECAVCKRVFLSSHQLISHYNAaH 30
                 6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.245735IPR007087Zinc finger, C2H2
PROSITE patternPS000280930IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MPFSEPQECA VCKRVFLSSH QLISHYNAAH SNRQYSTFSS SPAAAAAAAP TTFRHYTNVN  60
GRNPNPDFQA RNQFDVNYYR RGYLDDQGRF HKGSPHAPAM SPTRKYKFLL PKMPPTTMPE  120
TPKLMDLFPE TSSGGTRTLP LLCQLDQWRP EDSAVAENGG ANSSPIDLSL RL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO223293270.0
Expression AtlasAT1G04445-
AtGenExpressAT1G04445-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G04445.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G04445
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF19P190.0AC000104.1 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001323187.11e-127C2H2-like zinc finger protein
TrEMBLA0A1P8AWD11e-126A0A1P8AWD1_ARATH; C2H2-like zinc finger protein
STRINGAT1G04445.11e-126(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135511321