PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G08985.1
Common NameF7G19.27
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 101aa    MW: 11731.5 Da    PI: 9.632
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G08985.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.6e-11896289
                 EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3  2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                 +k+l+  d +  + l+lp++ +e++       +++ ++++ + d + +s+ v+l  r+++++y++++GW e  +a +Lk+gD++ ++ ++ ++
  AT1G08985.1  8 VKTLSETDCSHDNKLILPRDKVENIvrstgVPVPRMGIQVEILD-NTNSYWVNL--RQSQRGYFIGRGWGELRDARNLKAGDVIKLYWQN-TK 96
                 6899999***************999**97644455666666666.4477779**..999999**********************999433.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-12294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-15396IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-106100No hitNo description
SMARTSM010199.2E-97101IPR003340B3 DNA binding domain
PROSITE profilePS508639.0517101IPR003340B3 DNA binding domain
PfamPF023625.0E-9897IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MDPNMMIVKT LSETDCSHDN KLILPRDKVE NIVRSTGVPV PRMGIQVEIL DNTNSYWVNL  60
RQSQRGYFIG RGWGELRDAR NLKAGDVIKL YWQNTKFIFS M
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306808981e-173
Expression AtlasAT1G08985-
AtGenExpressAT1G08985-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G08985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G08985
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026841e-171CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF7G191e-171AC000106.1 Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_849620.18e-71AP2/B3-like transcriptional factor family protein
SwissprotQ8GWU17e-72Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLD7KYM62e-47D7KYM6_ARALL; Uncharacterized protein
STRINGAT1G08985.13e-70(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Publications ? help Back to Top
  1. Seki M, et al.
    Functional annotation of a full-length Arabidopsis cDNA collection.
    Science, 2002. 296(5565): p. 141-5
    [PMID:11910074]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]