PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G10586.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 174aa    MW: 20083.4 Da    PI: 10.2851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G10586.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.1e-061663254
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 r+  n rE+ RR r+++ f+ L +++ +      ++l   +   +Av Y+ +L
  AT1G10586.1 16 REQRNLREKERRMRMKHLFSILSSHVSPT-----RRLPVPQLIDQAVSYMIQL 63
                 7889**********************997.....7899999999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-111380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.1981463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-51675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00762069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MERAREIGEG SASSLREQRN LREKERRMRM KHLFSILSSH VSPTRRLPVP QLIDQAVSYM  60
IQLKEKVNYL NEMKRRMLGG EVKNRSEGSS LLPKLSIRSL DSIIEMNLVM DLNMKGVMLH  120
KLVSVFEEEG AQVMSANLQN LNDRTFYTII AQAIICRIGI DPSRIEERLR DIIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKER
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible263210_at8e-85
Expression AtlasAT1G10586-
AtGenExpressAT1G10586-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G10586.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G10586
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070671e-179AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBankCP0026841e-179CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001117258.11e-123basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9XIJ11e-124BH168_ARATH; Transcription factor bHLH168
TrEMBLD7KLF81e-110D7KLF8_ARALL; T10O24.23
STRINGAT1G10586.11e-122(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Representative plantOGRP13451147