PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G19040.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 172aa    MW: 20454.2 Da    PI: 6.878
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G19040.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.32.3e-13668265
          NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrd 65
                 ++GfrF+P dee+  +yL +k+++ ++++  +ik++d+y+ +Pw L + v+    ++ ewy+F+k++
  AT1G19040.1  6 TRGFRFRPADEEVT-DYLMRKTQSPEFSC--FIKTIDLYDKDPWVLGH-VRDpcyNHYEWYYFVKKN 68
                 78**********87.*********99988..7**************73.222233667******986 PP
2NAM24.38.8e-08113142334
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevi 34 
                   GfrFhPtd+el++ yL++k+++ ++++  +i
  AT1G19040.1 113 YGFRFHPTDQELLSLYLTPKAHSPDFSC--FI 142
                  7*******************99988766..34 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-15479IPR003441NAC domain
PROSITE profilePS5100513.8175145IPR003441NAC domain
PfamPF023651.2E-5771IPR003441NAC domain
SuperFamilySSF1019415.36E-8108140IPR003441NAC domain
PfamPF023652.0E-5113144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MSEVLTRGFR FRPADEEVTD YLMRKTQSPE FSCFIKTIDL YDKDPWVLGH VRDPCYNHYE  60
WYYFVKKNPL GNEYLDKPRL NGFEHPRLKW DVLKQIHDAL SSGQNVPPSV FTYGFRFHPT  120
DQELLSLYLT PKAHSPDFSC FIRERESYMP WSHGFLNMLD LLFTRTVNGT TL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183946870.0
Genevisible259471_at0.0
Expression AtlasAT1G19040-
AtGenExpressAT1G19040-
ATTED-IIAT1G19040-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00150DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G19040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G19040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0686020.0AC068602.2 Genomic sequence for Arabidopsis thaliana BAC F14D16 from chromosome I, complete sequence.
GenBankBT0294360.0BT029436.1 Arabidopsis thaliana At1g19040 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_173338.11e-127NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
TrEMBLA0JQ661e-126A0JQ66_ARATH; At1g19040
STRINGAT1G19040.11e-127(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2625233
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Jiao Y, et al.
    A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development.
    Plant Physiol., 2003. 133(4): p. 1480-93
    [PMID:14605227]
  3. Nakano T, et al.
    Identification of genes of the plant-specific transcription-factor families cooperatively regulated by ethylene and jasmonate in Arabidopsis thaliana.
    J. Plant Res., 2006. 119(4): p. 407-13
    [PMID:16820983]
  4. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]