PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G20600.1
Common NameF2D10.9, F5M15.7
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 237aa    MW: 27282.6 Da    PI: 4.3442
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G20600.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.6e-14126215282
                  EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS
           B3   2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 
                  +k+l++sdv +  +rl+l+k+ ++e        ++++ ++++++++ ++g  +++++k+  ++++++ vlt+GW +Fv + gL  + Dfv+ 
  AT1G20600.1 126 KKQLMSSDVDTDqSRLMLSKEQVKEKmlpfleeSEDPVKGVDVSVYGPDGevQQMKFKM--WNGDKTPVLTSGWMQFVADYGLLkTSDFVTD 215
                  699******99879***********9*****9977889************666666666..*********************8659999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.61E-15125212IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.7E-9125230IPR003340B3 DNA binding domain
CDDcd100179.08E-16125214No hitNo description
Gene3DG3DSA:2.40.330.103.2E-15126229IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009025anatomyvascular leaf
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MANSTGKPTS STQEDEEVTY ILAQLMQDVM DREEDIDDED DIDDEVASLP LLLVSQANQK  60
QSRKREEKTE KNQPKRVKNQ NIMKINIHDF SEETLRLIED WYNAELDPQD IFGDDEVTRR  120
FSRPIKKQLM SSDVDTDQSR LMLSKEQVKE KMLPFLEESE DPVKGVDVSV YGPDGEVQQM  180
KFKMWNGDKT PVLTSGWMQF VADYGLLKTS DFVTDGKVSQ LEHVFIRGSK VRCCNTS
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183948850.0
Genevisible255416_at1e-145
Expression AtlasAT1G20600-
AtGenExpressAT1G20600-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G20600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G20600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0276650.0AC027665.4 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I, complete sequence.
GenBankAC0692510.0AC069251.5 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_173484.11e-175AP2/B3-like transcriptional factor family protein
SwissprotQ9LM901e-176Y1060_ARATH; B3 domain-containing protein At1g20600
TrEMBLA0A178WJD01e-157A0A178WJD0_ARATH; Uncharacterized protein
STRINGAT1G20600.11e-174(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Representative plantOGRP1051734
Publications ? help Back to Top
  1. Mitra SK,Gantt JA,Ruby JF,Clouse SD,Goshe MB
    Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques.
    J. Proteome Res., 2007. 6(5): p. 1933-50
    [PMID:17432890]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  3. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]