PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G32540.3
Common NameLOL1, T9G5.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LSD
Protein Properties Length: 154aa    MW: 15872.4 Da    PI: 7.7276
Description lsd one like 1
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G32540.3genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1468.3e-153761125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL+YP GA+sV+Ca+C++V
  AT1G32540.3 37 CSGCRNLLMYPVGATSVCCAVCNAV 61
                 ************************9 PP
2zf-LSD146.75.3e-1576100125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  CggC+tlL+Y rGA+sV+C++C+tV
  AT1G32540.3  76 CGGCHTLLMYIRGATSVQCSCCHTV 100
                  ************************9 PP
3zf-LSD137.53.9e-12114138125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+C  lL+Y +GA+sV+Ca+C++V
  AT1G32540.3 114 CGNCMMLLMYQYGARSVKCAVCNFV 138
                  ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.6E-143464IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-113761IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.6E-1573102IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-1276100IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.8E-10111141IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-11114138IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPALAPSY NTPPANGSTS GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA  60
VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLALEANQVA HVNCGNCMML  120
LMYQYGARSV KCAVCNFVTS VGGSTSTTDS KFNN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.235210.0bud| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible256469_at0.0
Expression AtlasAT1G32540-
AtGenExpressAT1G32540-
ATTED-IIAT1G32540-
Functional Description ? help Back to Top
Source Description
TAIREncodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G32540.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top
Source Target Gene (A: Activate/R: Repress)
ATRM AT1G08830(R)
Interaction ? help Back to Top
Source Intact With
IntActSearch Q93ZB1
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G32540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0576750.0AY057675.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds.
GenBankAY1169510.0AY116951.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds.
GenBankAY3496180.0AY349618.1 Arabidopsis thaliana LSD1-like (LOL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001117399.11e-107lsd one like 1
RefseqNP_564405.11e-107lsd one like 1
SwissprotQ93ZB11e-108LOL1_ARATH; Protein LOL1
TrEMBLA0A0D3CGN55e-95A0A0D3CGN5_BRAOL; Uncharacterized protein
STRINGBo5g087050.19e-96(Brassica oleracea)
Publications ? help Back to Top
  1. Epple P,Mack AA,Morris VR,Dangl JL
    Antagonistic control of oxidative stress-induced cell death in Arabidopsis by two related, plant-specific zinc finger proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2003. 100(11): p. 6831-6
    [PMID:12732715]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  4. Takemoto D,Hardham AR,Jones DA
    Differences in cell death induction by Phytophthora Elicitins are determined by signal components downstream of MAP kinase kinase in different species of Nicotiana and cultivars of Brassica rapa and Raphanus sativus.
    Plant Physiol., 2005. 138(3): p. 1491-504
    [PMID:15980203]
  5. Larkindale J,Vierling E
    Core genome responses involved in acclimation to high temperature.
    Plant Physiol., 2008. 146(2): p. 748-61
    [PMID:18055584]
  6. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  7. Yeh SH,Lin CS,Wu FH,Wang AY
    Analysis of the expression of BohLOL1, which encodes an LSD1-like zinc finger protein in Bambusa oldhamii.
    Planta, 2011. 234(6): p. 1179-89
    [PMID:21744093]
  8. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  9. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  10. Jin J, et al.
    An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors.
    Mol. Biol. Evol., 2015. 32(7): p. 1767-73
    [PMID:25750178]