PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G47760.1

Common Name

AGL102

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 184aa MW: 21282.6 Da PI: 10.1336

Description

AGAMOUS-like 102

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G47760.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.6	2.1e-20	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie+++ r+ tfs+Rrngi+KKA EL LC++e+av+++s+t+ y+y AT1G47760.1 9 KFIEDSIERKATFSRRRNGIFKKADELAKLCNVEIAVLVISPTNIPYTY 57 79******************************************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.123	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.5E-27	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.56E-34	2	77	No hit	No description
SuperFamily	SSF55455	2.35E-25	2	89	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-15	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.7E-21	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-15	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-15	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009089	anatomy	endosperm

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MGRRKIEIKF IEDSIERKAT FSRRRNGIFK KADELAKLCN VEIAVLVISP TNIPYTYGYP 60 CFNDVVERIQ NPSASSKLRS LMKELEQIKE FQEDLRKKQQ RNLEKSNMKE NVDLKLEDLV 120 AFKAKLEAYQ AGLKRKHVEM EDLSSPSILS KNTKNKMMRT EYSSGQSKGM YEFRAFGPGF 180 LGTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mnm_A	2e-14	3	66	18	81	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B	2e-14	3	66	18	81	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT1G47760
AtGenExpress	AT1G47760

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G47760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G47760

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY141241	0.0	AY141241.1 Arabidopsis thaliana MADS-box protein AGL102 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_175207.1	1e-133	AGAMOUS-like 102
TrEMBL	Q9FZF2	1e-132	Q9FZF2_ARATH; AGAMOUS-like 102
STRING	AT1G47760.1	1e-133	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16164	5	13
Representative plant	OGRP16	17	761

Link Out ? help Back to Top
Phytozome	AT1G47760.1
Entrez Gene	841187
iHOP	AT1G47760
wikigenes	AT1G47760

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Day RC,Herridge RP,Ambrose BA,Macknight RC Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. Plant Physiol., 2008. 148(4): p. 1964-84 [PMID:18923020] Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis. Plant Physiol., 2010. 154(1): p. 287-300 [PMID:20631316]