PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G48195.1
Common NameF21D18
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 82aa    MW: 9450.74 Da    PI: 8.2836
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G48195.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.5e-095680125
                 --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                 +++++C++++r+G+C+ G++CkF H
  AT1G48195.1 56 PGQAICPHYSRFGICRSGPTCKFDH 80
                 5789********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.13936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.976937IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-61437IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-65380IPR000571Zinc finger, CCCH-type
SMARTSM003560.00935582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8125582IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-75780IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MSEEKFPERP GEPECSYYLR TGNCYLKQNC KYHHPKNITP SEPQCTLNDK GLPLRPGQAI  60
CPHYSRFGIC RSGPTCKFDH FT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.631481e-139silique
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT1G48195
AtGenExpressAT1G48195
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G48195.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G48195
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0236731e-137AC023673.3 Genomic sequence for Arabidopsis thaliana BAC F21D18 from chromosome I, complete sequence.
GenBankCP0026841e-137CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_973988.11e-55Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ3ECU81e-56C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
TrEMBLD7KC261e-46D7KC26_ARALL; Zinc finger (CCCH-type) family protein
STRINGAT1G48195.16e-55(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Representative plantOGRP1375334
Publications ? help Back to Top
  1. Castelli V, et al.
    Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation.
    Genome Res., 2004. 14(3): p. 406-13
    [PMID:14993207]
  2. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  3. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]