PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G49475.1
Common NameF13F21.9
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 190aa    MW: 21997.1 Da    PI: 5.7587
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G49475.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.75e-14451231398
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++++ +p +f+ ++g k   +  +tl+++ g + ++++  ++ +++++++kGW+eF++a+ L +g f+ F+++g+s+f  +v +f+
  AT1G49475.1  45 EKMMKVPARFV-RFGPK--LTDNVTLQTPVGFKRSIRI--KRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCF--RVVIFD 123
                  356999****9.66533..5568***************..**************************************..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-2128125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-1829125IPR015300DNA-binding pseudobarrel domain
CDDcd100179.34E-1632123No hitNo description
PROSITE profilePS5086310.8733125IPR003340B3 DNA binding domain
SMARTSM010191.6E-1634125IPR003340B3 DNA binding domain
PfamPF023626.9E-1245123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MRNMHTNRRS PGPITSAATQ RRLKPEPEPT VKKFIKIILL SRIIEKMMKV PARFVRFGPK  60
LTDNVTLQTP VGFKRSIRIK RIGDEVWFEK GWSEFAEAHS LSDGHFLFFH YEGDSCFRVV  120
IFDVSASEIE YPLDDTDDNR EEVMDDDEQG FTGFESSDDD GEVVDMDELL KKKKKKPRVN  180
IKSENVIILD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169176LKKKKKKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.499600.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453612450.0
Expression AtlasAT1G49475-
AtGenExpressAT1G49475-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G49475.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G49475
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0075040.0AC007504.3 Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_683415.21e-138AP2/B3-like transcriptional factor family protein
SwissprotQ9XIB41e-139Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBLA0A178WDC11e-135A0A178WDC1_ARATH; Uncharacterized protein
STRINGAT1G49475.11e-137(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Representative plantOGRP1718538
Publications ? help Back to Top
  1. Castelli V, et al.
    Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation.
    Genome Res., 2004. 14(3): p. 406-13
    [PMID:14993207]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  3. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]