PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G51070.1
Common NamebHLH115, EN134, F23H24.8
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 226aa    MW: 25511.9 Da    PI: 7.1438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G51070.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-1170116453
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                  ++  rE++RRdr+N++f eL ++l +    + +K +K++i   A++ +++
  AT1G51070.1  70 SKACREKQRRDRLNDKFTELSSVLEPG---RTPKTDKVAIINDAIRMVNQ 116
                  5678**********************8...8**************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.02366117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-870116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1270136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.43E-870122No hitNo description
Gene3DG3DSA:4.10.280.101.7E-1171139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-872123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI  60
KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK TDKVAIINDA IRMVNQARDE  120
AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP  180
QTLSQAQAPG SKLVPFTTYP GFAMWQFMPP AAVDTSQDHV LRPPVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.171820.0bud| flower| inflorescence| root
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible245746_at0.0
Expression AtlasAT1G51070-
AtGenExpressAT1G51070-
ATTED-IIAT1G51070-
Function -- GeneRIF ? help Back to Top
  1. bHLH115 plays key roles in the maintenance of Fe homeostasis in Arabidopsis thaliana.
    [PMID: 28369511]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G51070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G51070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886320.0AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0856190.0AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence.
GenBankBT0024330.0BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds.
GenBankBT0062730.0BT006273.1 Arabidopsis thaliana At1g51070 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175518.11e-167basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9C6821e-168BH115_ARATH; Transcription factor bHLH115
TrEMBLA0A178W1E61e-165A0A178W1E6_ARATH; BHLH115
STRINGfgenesh2_kg.1__4178__AT1G51070.11e-159(Arabidopsis lyrata)
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  3. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  4. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  5. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  6. Cao D,Cheng H,Wu W,Soo HM,Peng J
    Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis.
    Plant Physiol., 2006. 142(2): p. 509-25
    [PMID:16920880]
  7. Long TA, et al.
    The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots.
    Plant Cell, 2010. 22(7): p. 2219-36
    [PMID:20675571]
  8. Selote D,Samira R,Matthiadis A,Gillikin JW,Long TA
    Iron-binding E3 ligase mediates iron response in plants by targeting basic helix-loop-helix transcription factors.
    Plant Physiol., 2015. 167(1): p. 273-86
    [PMID:25452667]
  9. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]