PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G54760.1
Common NameAGL85, T22H22.17
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 161aa    MW: 18175.5 Da    PI: 4.8392
Description AGAMOUS-like 85
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G54760.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.53e-0719442550
                 HHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF 25 eELSvLCdaevaviifsstgklyeys 50
                 +ELS+LC+aeva + +s +gk y++ 
  AT1G54760.1 19 NELSILCGAEVAFLGYSCSGKPYTFG 44
                 6***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.6571847IPR002100Transcription factor, MADS-box
PfamPF003191.8E-71943IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-91960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MKTDWSHYLS VEMESTISNE LSILCGAEVA FLGYSCSGKP YTFGSPSFQA VAERFLNREA  60
SSSLQRSVMN AHQQAKIQEL CKVYNRMVEE AKTEEAKVKK AAALAETMPV DEDAWWKVDP  120
KEVEDHEEAK KIMEKCEGLY EKLCNEAAAR IQRGDAENNN K
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO710353280.0
Genevisible260050_at1e-100
Expression AtlasAT1G54760-
AtGenExpressAT1G54760-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G54760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G54760
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT22H220.0AC005388.1 Sequence of BAC T22H22 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175874.11e-117AGAMOUS-like 85
TrEMBLA0A178WBF11e-116A0A178WBF1_ARATH; AGL85
TrEMBLQ9ZVL81e-116Q9ZVL8_ARATH; AGAMOUS-like 85
STRINGAT1G54760.11e-117(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Representative plantOGRP1617761
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  3. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  4. De Bodt S,Raes J,Van de Peer Y,Theissen G
    And then there were many: MADS goes genomic.
    Trends Plant Sci., 2003. 8(10): p. 475-83
    [PMID:14557044]
  5. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]