PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G60880.1

Common Name

AGL56, T7P1.3

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 201aa MW: 22659.3 Da PI: 5.3432

Description

AGAMOUS-like-56

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G60880.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.3	5.4e-10	11	49	1	38
S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLC.daevavi 38 k+i nk ++v f+kRr+g++ KA+ L+ L ++++a++ AT1G60880.1 11 KKIINKPAKTVAFTKRREGLFRKASQLCLLSpATQIAIL 49 57889999**********************835677766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.5E-5	3	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.358	3	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-7	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-13	5	85	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.3E-8	12	51	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.44E-15	19	82	No hit	No description
PRINTS	PR00404	1.8E-7	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025074	anatomy	embryo sac

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGGKKTKIEI KKIINKPAKT VAFTKRREGL FRKASQLCLL SPATQIAILA APMTSKSHAS 60 FYSFGHSSVD NVVSSLLYDH PPLTANQDNR SGLGFWWEDK RFDVSENVEE LKEAVDAVSR 120 MLNNVRCRLN DAVKSTQRDG GLEILHHQEE EVLQTRNDET KTNQTHEFEG GETSGSASWL 180 ENEDDILHFD DDFYTGIDPL F

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT1G60880
AtGenExpress	AT1G60880

Functional Description ? help Back to Top
Source	Description
TAIR	Root Specific
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G60880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G60880

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC018908	0.0	AC018908.8 Arabidopsis thaliana chromosome 1 BAC T7P1 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_176285.1	1e-150	AGAMOUS-like-56
Swissprot	Q9C633	5e-39	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	A0A178W6G0	1e-149	A0A178W6G0_ARATH; AGL56
TrEMBL	Q9C963	1e-149	Q9C963_ARATH; AGAMOUS-like-56
STRING	AT1G60880.1	1e-150	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145
Representative plant	OGRP10843	2	8

Link Out ? help Back to Top
Phytozome	AT1G60880.1
Entrez Gene	842380
iHOP	AT1G60880
wikigenes	AT1G60880

Publications ? help Back to Top
De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Boisson B,Giglione C,Meinnel T Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote. J. Biol. Chem., 2003. 278(44): p. 43418-29 [PMID:12912986] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Gan Y,Filleur S,Rahman A,Gotensparre S,Forde BG Nutritional regulation of ANR1 and other root-expressed MADS-box genes in Arabidopsis thaliana. Planta, 2005. 222(4): p. 730-42 [PMID:16021502] Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis. Plant Physiol., 2010. 154(1): p. 287-300 [PMID:20631316] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]