PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G60920.1

Common Name

AGL55, T7P1.6

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 191aa MW: 21501.1 Da PI: 6.6053

Description

AGAMOUS-like 55

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G60920.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.9	2.3e-12	11	49	1	38
S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLC.daevavi 38 krie+k r v f+kR+ g++ KA+EL+ L ++++a++ AT1G60920.1 11 KRIEDKNVRAVAFTKRKSGLFHKASELCLLSpGTQIAIL 49 79****************************756787776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.619	3	40	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.4E-12	3	64	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.00E-24	4	83	No hit	No description
PRINTS	PR00404	6.5E-9	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.49E-15	5	96	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.0E-11	12	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-9	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020090	anatomy	embryo sac central cell

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MGGTKRKIEM KRIEDKNVRA VAFTKRKSGL FHKASELCLL SPGTQIAILA TPLSSHSHAS 60 FYSFGHSSVD HVVSSLLHNQ HPSLPTNQDN RSGLGFWWED QAFDRLENVD ELKEAVDAVS 120 RMLNNVRLRL DDAVKSNQRD GSLVIHQEDE EVLQLGYKDT NQITKLEGET SASASLLKNV 180 VDNLHIDDRY Y

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	71035096	0.0
Expression Atlas	AT1G60920	-
AtGenExpress	AT1G60920	-

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00208	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G60920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G60920

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC018908	0.0	AC018908.8 Arabidopsis thaliana chromosome 1 BAC T7P1 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_176288.1	1e-140	AGAMOUS-like 55
Swissprot	Q9C633	1e-42	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	Q9C960	1e-139	Q9C960_ARATH; AGAMOUS-like 55
STRING	AT1G60920.1	1e-140	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145
Representative plant	OGRP10843	2	8

Link Out ? help Back to Top
Phytozome	AT1G60920.1
Entrez Gene	842383
iHOP	AT1G60920
wikigenes	AT1G60920

Publications ? help Back to Top
De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Boisson B,Giglione C,Meinnel T Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote. J. Biol. Chem., 2003. 278(44): p. 43418-29 [PMID:12912986] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis. Plant Physiol., 2010. 154(1): p. 287-300 [PMID:20631316] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]