PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G64100.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 806aa    MW: 91893.8 Da    PI: 6.0844
Description pentatricopeptide (PPR) repeat-containing protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G64100.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.24.2e-1665678010128
          NAM  10 tdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvgl 102
                  +dee++ +yL++k++g++ ++ + + e+  ++y+vePw Lp++++   +  ew++F kr++ky++    + +  +g W       +vlsk +ge++g 
  AT1G64100.2 656 SDEEIIENYLRPKINGETSSIPRYVVELaeELYTVEPWLLPRQTAPilNPGEWFYFGKRNRKYSN---LEGVHCEGSWILEDGCIAVLSKeTGEEIGG 750
                  69****************8887776555479**********5333333555************86...4445568****8888888888768888999 PP

          NAM 103 kktLvfy...kg.rapkgektdWvmheyrl 128
                   + + +y   kg ++++ + ++W+m eyrl
  AT1G64100.2 751 TTRFRYYyrnKGdKESRLKMSNWFMREYRL 780
                  999999977755356666789*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513757.903105139IPR002885Pentatricopeptide repeat
PfamPF130412.1E-8109152IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0032109140IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.712140174IPR002885Pentatricopeptide repeat
PfamPF128547.1E-11171203IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.082175209IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.9E-6177207IPR002885Pentatricopeptide repeat
PfamPF130415.2E-13224273IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.92225259IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.6E-7227260IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.981260294IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.3E-7262296IPR002885Pentatricopeptide repeat
PfamPF130419.1E-19294343IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.43295329IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.5E-7297331IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.417330364IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.5E-8332366IPR002885Pentatricopeptide repeat
PfamPF130411.2E-13364413IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.567365399IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-5368401IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.939400430IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.3E-8402427IPR002885Pentatricopeptide repeat
PfamPF130419.2E-16430478IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.573431465IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-8433466IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.934466500IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-8469502IPR002885Pentatricopeptide repeat
PfamPF128542.7E-9497526IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.227501535IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.2E-5503536IPR002885Pentatricopeptide repeat
PfamPF130419.2E-17536583IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.937536570IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.8E-8538572IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.893571605IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.8E-6574606IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.266606640IPR002885Pentatricopeptide repeat
PfamPF015355.4E-8608638IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.3E-9609641IPR002885Pentatricopeptide repeat
PROSITE profilePS5100523.99647800IPR003441NAC domain
PfamPF023653.9E-9656780IPR003441NAC domain
SuperFamilySSF1019411.83E-23656798IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009010anatomyseed
PO:0009046anatomyflower
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MTLQSQSSHC LNVHSSMVRD IEKCEQKTKR DIEKKNTKSG GVRLNSRRLI HGRVAEKGTK  60
SLPSLTQVTF EGEELKLKSG SHYFKSLDDA IDFFDYMVRS RPFYTAVDCN KVIGVFVRMN  120
RPDVAISLYR KMEIRRIPLN IYSFNILIKC FCDCHKLSFS LSTFGKLTKL GFQPDVVTFN  180
TLLHGLCLED RISEALALFG YMVETGFLEA VALFDQMVEI GLTPVVITFN TLINGLCLEG  240
RVLEAAALVN KMVGKGLHID VVTYGTIVNG MCKMGDTKSA LNLLSKMEET HIKPDVVIYS  300
AIIDRLCKDG HHSDAQYLFS EMLEKGIAPN VFTYNCMIDG FCSFGRWSDA QRLLRDMIER  360
EINPDVLTFN ALISASVKEG KLFEAEKLCD EMLHRCIFPD TVTYNSMIYG FCKHNRFDDA  420
KHMFDLMASP DVVTFNTIID VYCRAKRVDE GMQLLREISR RGLVANTTTY NTLIHGFCEV  480
DNLNAAQDLF QEMISHGVCP DTITCNILLY GFCENEKLEE ALELFEVIQM SKIDLDTVAY  540
NIIIHGMCKG SKVDEAWDLF CSLPIHGVEP DVQTYNVMIS GFCGKSAISD ANVLFHKMKD  600
NGHEPDNSTY NTLIRGCLKA GEIDKSIELI SEMRSNGFSG DAFTIKMAEE IICRVSDEEI  660
IENYLRPKIN GETSSIPRYV VELAEELYTV EPWLLPRQTA PILNPGEWFY FGKRNRKYSN  720
LEGVHCEGSW ILEDGCIAVL SKETGEEIGG TTRFRYYYRN KGDKESRLKM SNWFMREYRL  780
YYKSRRVFNG RQVFCIITCN DEHFIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A1e-116866698448pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.360470.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible262328_at0.0
Expression AtlasAT1G64100-
AtGenExpressAT1G64100-
ATTED-IIAT1G64100-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G64100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G64100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0077640.0AC007764.2 Genomic sequence for Arabidopsis thaliana BAC F22C12 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4463930.0DQ446393.1 Arabidopsis thaliana clone pENTR221-At1g64100 pentatricopeptide repeat-containing protein (At1g64100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001077770.10.0pentatricopeptide (PPR) repeat-containing protein
SwissprotQ9SH600.0PP103_ARATH; Pentatricopeptide repeat-containing protein At1g64100
TrEMBLA8MRJ80.0A8MRJ8_ARATH; Pentatricopeptide (PPR) repeat-containing protein
STRINGAT1G64100.20.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Howell MD, et al.
    Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting.
    Plant Cell, 2007. 19(3): p. 926-42
    [PMID:17400893]
  3. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  4. Curran A, et al.
    Calcium-dependent protein kinases from Arabidopsis show substrate specificity differences in an analysis of 103 substrates.
    Front Plant Sci, 2011. 2: p. 36
    [PMID:22645532]