PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G67100.1

Common Name

ASL37, F5A8.2, LBD40

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 233aa MW: 25700.4 Da PI: 8.122

Description

LOB domain-containing protein 40

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G67100.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.6	2.5e-30	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C ++p++ +++q++++ +++k++G++ +++ll++ p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+++e AT1G67100.1 4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVE 101 6*******************9999777889***************************************************************9 PP DUF260 94 lallk 98 +++++ AT1G67100.1 102 AVMRG 106 98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.021	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.9E-25	4	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000037	anatomy	shoot apex
PO:0000084	anatomy	plant sperm cell
PO:0009009	anatomy	plant embryo
PO:0009010	anatomy	seed
PO:0009046	anatomy	flower
PO:0009052	anatomy	flower pedicel
PO:0001078	developmental stage	plant embryo cotyledonary stage
PO:0001081	developmental stage	mature plant embryo stage
PO:0001185	developmental stage	plant embryo globular stage
PO:0004507	developmental stage	plant embryo bilateral stage
PO:0007611	developmental stage	petal differentiation and expansion stage
PO:0007616	developmental stage	flowering stage

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV EAVMRGSPVT PIACDAAVTG 120 QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE 180 PKTWIGLELT LGLEPLARGN HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.19223	0.0	seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	264469_at	0.0
Expression Atlas	AT1G67100	-
AtGenExpress	AT1G67100	-
ATTED-II	AT1G67100	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G67100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G67100

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473870	0.0	AB473870.1 Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein, complete cds.
GenBank	BT010943	0.0	BT010943.1 Arabidopsis thaliana At1g67100 gene, complete cds.
GenBank	BT011650	0.0	BT011650.1 Arabidopsis thaliana At1g67100 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_176881.1	1e-173	LOB domain-containing protein 40
Swissprot	Q9ZW96	1e-174	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	A0A178WDZ5	1e-171	A0A178WDZ5_ARATH; LBD40
STRING	AT1G67100.1	1e-172	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15248	15	18
Representative plant	OGRP403	16	99

Link Out ? help Back to Top
Phytozome	AT1G67100.1
Entrez Gene	843030
iHOP	AT1G67100
wikigenes	AT1G67100

Publications ? help Back to Top
Iwakawa H, et al. The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant Cell Physiol., 2002. 43(5): p. 467-78 [PMID:12040093] Shuai B,Reynaga-Peña CG,Springer PS The lateral organ boundaries gene defines a novel, plant-specific gene family. Plant Physiol., 2002. 129(2): p. 747-61 [PMID:12068116] Kiba T, et al. Combinatorial microarray analysis revealing arabidopsis genes implicated in cytokinin responses through the His->Asp Phosphorelay circuitry. Plant Cell Physiol., 2005. 46(2): p. 339-55 [PMID:15695462] Yang W, et al. An egg apparatus-specific enhancer of Arabidopsis, identified by enhancer detection. Plant Physiol., 2005. 139(3): p. 1421-32 [PMID:16258010] Becerra C,Puigdomenech P,Vicient CM Computational and experimental analysis identifies Arabidopsis genes specifically expressed during early seed development. BMC Genomics, 2006. 7: p. 38 [PMID:16504176] Zentella R, et al. Global analysis of della direct targets in early gibberellin signaling in Arabidopsis. Plant Cell, 2007. 19(10): p. 3037-57 [PMID:17933900] Matsumura Y,Iwakawa H,Machida Y,Machida C Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members. Plant J., 2009. 58(3): p. 525-37 [PMID:19154202] Josse EM, et al. A DELLA in disguise: SPATULA restrains the growth of the developing Arabidopsis seedling. Plant Cell, 2011. 23(4): p. 1337-51 [PMID:21478445] Efroni I, et al. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev. Cell, 2013. 24(4): p. 438-45 [PMID:23449474]