PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G77570.1
Common NameAtREN1, REN1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 147aa    MW: 17224.1 Da    PI: 10.2929
Description Winged helix-turn-helix transcription repressor DNA-binding
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G77570.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind54.92.4e-17271202101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT.--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkh.snfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   F +++ye+++d++++ +iswse++nsf++++  ef +++Lpky    +n++ F   L   gFk vk +++         eF h+ F ++k el++k+
   AT1G77570.1  27 FYMRVYEVVDDASTDAIISWSESNNSFIIWNVGEFYRRILPKYVDLgTNLSRFFSNLRSHGFKIVKGRTGV-------LEFGHEDFIRDKLELMKKM 116
                   8999***************************************985379999***************9987.......**************99997 PP

                   XXXX CS
  HSF_DNA-bind  98 krkk 101
                      k
   AT1G77570.1 117 VSDK 120
                   6544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.4E-1822122IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.05E-1926116IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.6E-1926113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-1527116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-52750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-57991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MLKSRNPNYS KILICEVCEV LGMGYNFYMR VYEVVDDAST DAIISWSESN NSFIIWNVGE  60
FYRRILPKYV DLGTNLSRFF SNLRSHGFKI VKGRTGVLEF GHEDFIRDKL ELMKKMVSDK  120
RKARKAAKSK ARKARVQVEF LFQHLQI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.344540.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible259711_at0.0
Expression AtlasAT1G77570-
AtGenExpressAT1G77570-
ATTED-IIAT1G77570-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G77570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G77570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107040.0AC010704.6 Arabidopsis thaliana chromosome 1 BAC T5M16 genomic sequence, complete sequence.
GenBankAK1768110.0AK176811.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL25-36-D05.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177880.21e-106Winged helix-turn-helix transcription repressor DNA-binding protein
TrEMBLQ67XK81e-105Q67XK8_ARATH; Putative DNA-binding protein
STRINGAT1G77570.11e-105(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Kiba T,Aoki K,Sakakibara H,Mizuno T
    Arabidopsis response regulator, ARR22, ectopic expression of which results in phenotypes similar to the wol cytokinin-receptor mutant.
    Plant Cell Physiol., 2004. 45(8): p. 1063-77
    [PMID:15356332]