PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G80590.1
Common NameATWRKY66, T21F11.8, WRKY66
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 235aa    MW: 26402.8 Da    PI: 6.1523
Description WRKY DNA-binding protein 66
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G80590.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.81.4e-2086145359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  Dg+ WrKYGqK++k s++ r YYrC++a   +C ++k+v++ +++p v   tY g+H +e
  AT1G80590.1  86 DGFIWRKYGQKTIKTSPHQRWYYRCAYAkdqNCDATKRVQKIQDNPPVYRNTYVGQHACE 145
                  9**************************98999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.12879147IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-2282147IPR003657WRKY domain
SuperFamilySSF1182904.32E-2283147IPR003657WRKY domain
SMARTSM007747.5E-3184146IPR003657WRKY domain
PfamPF031069.6E-2286145IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0025281anatomypollen
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSLEIDAKAV SALLLGQGCA NNLKTLLKNH ETGSVSTEPL INSILDSFSF ALSSQNIPRH  60
VSQRSSKKKM CGIQGMEDSP TPAHIDGFIW RKYGQKTIKT SPHQRWYYRC AYAKDQNCDA  120
TKRVQKIQDN PPVYRNTYVG QHACEAPAYA VNNGGTYGSK MIKFDYVIPE SVMPQPLSID  180
SQEITMEDKD TDDHILNYIN EHLMEDEAYD VFPDVLGERC CFGLEPFPGL NINKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-15861451069OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184128730.0
Genevisible260278_at0.0
Expression AtlasAT1G80590-
AtGenExpressAT1G80590-
ATTED-IIAT1G80590-
Functional Description ? help Back to Top
Source Description
TAIRmember of WRKY Transcription Factor; Group III
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G80590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G80590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935410.0AB493541.1 Arabidopsis thaliana At1g80590 mRNA for hypothetical protein, partial cds, clone: RAAt1g80590.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_178174.11e-179WRKY DNA-binding protein 66
SwissprotQ9M8M61e-180WRK66_ARATH; Probable WRKY transcription factor 66
TrEMBLA0A178W5N01e-173A0A178W5N0_ARATH; WRKY66
STRINGAT1G80590.11e-179(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Representative plantOGRP1417875
Publications ? help Back to Top
  1. Eulgem T,Rushton PJ,Robatzek S,Somssich IE
    The WRKY superfamily of plant transcription factors.
    Trends Plant Sci., 2000. 5(5): p. 199-206
    [PMID:10785665]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  3. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  4. Hampton CR, et al.
    Cesium toxicity in Arabidopsis.
    Plant Physiol., 2004. 136(3): p. 3824-37
    [PMID:15489280]
  5. Truman W,de Zabala MT,Grant M
    Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance.
    Plant J., 2006. 46(1): p. 14-33
    [PMID:16553893]
  6. Krinke O, et al.
    Phosphatidylinositol 4-kinase activation is an early response to salicylic acid in Arabidopsis suspension cells.
    Plant Physiol., 2007. 144(3): p. 1347-59
    [PMID:17496105]