PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT2G12940.1

Common Name

UNE4

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 294aa MW: 33320 Da PI: 9.6031

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT2G12940.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.2	2e-09	150	202	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 k rr kNRe+A q+K++++ +Le ++ e+eN + ++++ l++ AT2G12940.1 150 KEVRRILKNRESAAHLKQKKLQYMINLEHRINFVENENASIFEKIKLLENDKT 202 5568889*****************************************99755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-12	146	210	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.806	148	211	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.3E-13	148	199	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.9E-11	150	204	No hit	No description
SuperFamily	SSF57959	3.21E-10	150	205	No hit	No description
CDD	cd14703	1.06E-12	152	202	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MNGSDNTTPS RPWSITQPSL AFSSLPPLSP SPSSSRRNSL PLMNPSTSME SRDSSMRFKK 60 NSLLPPLGVK KIAPKDIGPL KRHYRSVSMD SCLSDLLKLT PSPGNTPSSR LVDGDQNASR 120 LEFDANDYTD DELNKIAKSN KLKEVALDPK EVRRILKNRE SAAHLKQKKL QYMINLEHRI 180 NFVENENASI FEKIKLLEND KTMMMNEKKE IMIRIESMEI QAQLRDVLTE HLHGESERLK 240 AALISNENGN GKVQKLRMAT CEVLQNRHEF DKSNMEVMDS NMINWSQPNP GFNG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.40699	0.0	silique

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	240254451	0.0
Genevisible	263969_at	0.0
Expression Atlas	AT2G12940	-
AtGenExpress	AT2G12940	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT2G12940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT2G12940

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006437	0.0	AC006437.5 Arabidopsis thaliana chromosome 2 clone T19K21 map mi421, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_178948.5	0.0	Basic-leucine zipper (bZIP) transcription factor family protein
TrEMBL	Q9SKF8	0.0	Q9SKF8_ARATH; Basic-leucine zipper (BZIP) transcription factor family protein
STRING	AT2G12940.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19327	3	6
Representative plant	OGRP126	17	181

Link Out ? help Back to Top
Phytozome	AT2G12940.1
Entrez Gene	815775
iHOP	AT2G12940
wikigenes	AT2G12940

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Pagnussat GC, et al. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Development, 2005. 132(3): p. 603-14 [PMID:15634699] Wagner R,Pfannschmidt T Eukaryotic transcription factors in plastids--Bioinformatic assessment and implications for the evolution of gene expression machineries in plants. Gene, 2006. 381: p. 62-70 [PMID:16934950] Tsugama D,Liu S,Takano T Analysis of functions of VIP1 and its close homologs in osmosensory responses of Arabidopsis thaliana. PLoS ONE, 2014. 9(8): p. e103930 [PMID:25093810]