PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G18490.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 251aa    MW: 29424 Da    PI: 9.3191
Description C2H2-like zinc finger protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G18490.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05169191123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+Cp+C+  F ++  +  H+++H
  AT2G18490.1 169 YTCPKCNSIFDTSQKFAAHMSSH 191
                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.369169196IPR007087Zinc finger, C2H2
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090057Biological Processroot radial pattern formation
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MRRNIDYVSS TDYLPIKDNP HLTRVSFTQT ITNRYSSIVP TNSLDAVQYD IELVKRAMDS  60
KPNIWNPVFY PPNFLGKQCE ILNPEPLNVI FPHQNSGDRQ YLNMFSLSSK HNHDQNVFHE  120
GRSSTKIPKP TMSIEKTTEY IDCEENEKSD DAQYDGRIHS LPYKKYGPYT CPKCNSIFDT  180
SQKFAAHMSS HYKSETNKER AQRFRARNKR KYRKLNLEVY GESQKIKQED GVHNDGRSDD  240
KPIQHHKILF R
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183987560.0
Genevisible265921_at0.0
Expression AtlasAT2G18490-
AtGenExpressAT2G18490-
ATTED-IIAT2G18490-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G18490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G18490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0061350.0AC006135.3 Arabidopsis thaliana chromosome 2 clone F24H14 map CIC06E08, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001323986.10.0C2H2-like zinc finger protein
RefseqNP_179439.10.0C2H2-like zinc finger protein
TrEMBLQ1PF470.0Q1PF47_ARATH; C2H2-like zinc finger protein
TrEMBLQ9ZU640.0Q9ZU64_ARATH; C2H2-like zinc finger protein
STRINGAT2G18490.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]